Success Stories

Aquatic eDNA macroinvertebrate monitoring of chalk streams

Aquatic eDNA macroinvertebrate monitoring of chalk streams

Project Snapshot

Overview

  • River Action Project Chairman Charles Watson conducted eDNA surveys of aquatic macroinvertebrates in three Hampshire chalk streams as part of the Upper Itchen Initiative.  
  • Despite having no previous ecological training, Charles was able to collect the eDNA samples and send them to the NatureMetrics laboratories for analysis quickly and safely.
  • The project delivered data across 3 different sites and highlighted significant differences in macroinvertebrate diversity at sites with different suspected levels of pollution.  
Location
Hampshire, UK
Project Date
Project Length
Sample Type
Aquatic
Sector
Conservation
Group Targeted
Environment
Freshwater Rivers

What the Client Says

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“It was just mind-blowing to see the diversity of invertebrate life identified through NatureMetrics’ DNA analysis of these three rivers.”

Charles Watson – Project chairman, River Action

Charles Watson – Project chairman, River Action

The Challenge

The River Itchen and its tributaries are part of an important chalk stream network, and local conservation groups and charities have expressed concern about the impacts of businesses in the area. With limited resources, the group hoped to collect data on macroinvertebrate communities from across the landscape in order to characterise the ecological impacts of industrial activity on the River Itchen.  

Our Role

  • Following an online training session, eDNA samples were collected spread across three separate chalk streams.  
  • In the lab, we analysed the samples using the eDNA Macroinvertebrate metabarcoding pipeline. This analysis specifically targets aquatic insects, including pollution-sensitive groups such as mayflies (Ephemeroptera), stoneflies (Plecoptera) and caddisflies (Trichoptera).
  • The results were detailed in an easy-to-understand report that highlighted significant differences in macroinvertebrate diversity at sites with different suspected levels of pollution.
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The Findings

Highlights of the report included:

  • A total of 339 taxa were detected, belonging to 17 orders, 54 families and 187 genera. This included midges (Diptera: Chironomidae) which are extremely challenging to identify with conventional morphology and are therefore often overlooked or lumped into a single taxon in surveys.
  • The most abundant groups in terms of sequence read count were flies (Diptera) and mayflies (Trichoptera). Other important groups such as stoneflies (Plecoptera) and caddisflies (Trichoptera) were also detected, but the freshwater shrimp Gammarus gammarus was a notable absence from the dataset since this analysis really targets aquatic insects.
  • The most abundant species in terms of sequence reads was the Large Dark Olive (Baetis rhodani).
 The graph shows the proportion of DNA allocated to families (rows) in eleven sampling sites (columns). Each bubble per sample represents the proportion of DNA  for each species for that sample. The size of the bubble is relative to the number of sequences from all species for that sample.
The graph shows the proportion of DNA allocated to families (rows) in eleven sampling sites (columns). Each bubble per sample represents the proportion of DNA  for each species for that sample. The size of the bubble is relative to the number of sequences from all species for that sample.

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